Scaffold Ga0228619_1037507

Overview

Basic Information

• Taxon OID: 3300028130
• Scaffold ID: Ga0228619_1037507
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 22D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1405
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F004166	Metagenome / Metatranscriptome	450	N
F096597	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228619_10375071	F096597	AGG	MKKFLLIALTIPNFIQADDFKLVCEGEESNYRNDVLENTSKASFILHVRDDSIVIDSMTYKSK
Ga0228619_10375073	F002915	N/A	MKKLFLLVLVIPILGQSKEVFTNDQGLKVEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICSDQNMIKQLEKKAKETE
Ga0228619_10375074	F004166	N/A	KLILLFLLIPLISCSDHQKNSSWGSYATNKETQKQEFWFISYKTREECIADMQWQLEGEDDPNKKRISILHTKPYGCHFMSNNKWLSMYYYLVYKDEDLGCLWESSNPNVQIKYSVTLKTFVHVPEQGRCILGD