NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233401_1021739

Scaffold Ga0233401_1021739


Overview

Basic Information
Taxon OID3300028127 Open in IMG/M
Scaffold IDGa0233401_1021739 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 49D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1672
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042906Metagenome / Metatranscriptome157Y
F073533Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0233401_10217391F073533N/AIGFTSTLLQSYQEIRYKLDMIWGLYKDIHRIPDIDFKIVLDIDKYLDGELDDWYKKLEMFKLGSVQFRVNYHKDVFKRIGYNQLCQRVFDDFNAPVVITPSFLTDRNVRGKVSQHLENFKRDMLEQKIDDKWLNLYTFFDAKFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLDSCVALKEYMYASD
Ga0233401_10217392F042906AGGAGMPLIKNNLYYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDKSQLYIAKEFIRDITDKGILVDEMLIGPTDFLASENFYEVMPELVDIINENSPILAFVSTLIDGDIERFCKYITDNINFDTEIEIGIATNPHKFFNEDYIQHVSDILKYIDKNLQHEVTYTFVVNIKDYGLDYEALHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHAGMNYTVLNYKRGDWYLSPFMYENMAIYDDMFKIKSFDDVVPMIEQQIERAKRTECEDCPLFFSCYNRKIVMLRDYLGVDRCI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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