Scaffold Ga0256368_1077018

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256368_1077018

Scaffold Ga0256368_1077018

Overview

Basic Information
Taxon OID	3300028125 Open in IMG/M
Scaffold ID	Ga0256368_1077018 Open in IMG/M
Source Dataset Name	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	569
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002182	Metagenome / Metatranscriptome	586	Y
F019556	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256368_10770181	F019556	N/A	LIMTVCALAFHEHTYAVWELRELLMERQLNLWELLEQLEYVTAEQRVVVYTDIELIRQEINHIIQQLVQHDRSQHP
Ga0256368_10770182	F002182	AGGA	MIYTDQENEWLSKPLKKTKRVRNQTADGSAPKGRDYRKHDWAITTTIEID

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