NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256368_1041523

Scaffold Ga0256368_1041523


Overview

Basic Information
Taxon OID3300028125 Open in IMG/M
Scaffold IDGa0256368_1041523 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013135Metagenome274Y
F031664Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0256368_10415231F031664N/AGLESNFFNSMIPTLNKAINKERAVEASLEYGERIDLYVQSNPDASYNEQQQYARQLRIDLYDKYQDVKTEQITAFNLEENKFNVIRETNLIVEAKNNYIADPKAKNILITMSRLNGYVDEKGKPQPIKFYNDYIKILKSRQEG
Ga0256368_10415232F013135AGAAGGMADVQLSEEAIEFEKQFEESTKKVTPVNSGLITNPDEEDFNFWNKAGSLTLSAGQGVVNAVEEQGDFLDENIVSLGGLEFGDEDGKFTFKDLIPKYVSPKKWKEGGYSQKRNLPVFHKPEGIGENLT

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