Scaffold Ga0256368_1041496

Overview

Basic Information

• Taxon OID: 3300028125
• Scaffold ID: Ga0256368_1041496
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 818
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium TMED38 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F003073	Metagenome / Metatranscriptome	509	Y
F100955	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256368_10414961	F002430	N/A	KQVNAILVALDAEIEMQLGGRPVDWEFFPEVAAMMMAYYTTRCKFEETTND
Ga0256368_10414962	F100955	AGGAG	MIKKYTEEQIADAVTNCVESWDRDKLVGYASAALYEVFMDRSRPISHIDDLITEFGDG
Ga0256368_10414963	F003073	GGAG	MGKKLENMTTDERIAYWAAQREKERIQRRDRIAKLSLDQRVAVIKVYELVDEILDTAMYPDLGGIKAVTAYDLQELSDARDRLRNEFNLDIREQG