Basic Information | |
---|---|
Taxon OID | 3300028125 Open in IMG/M |
Scaffold ID | Ga0256368_1007177 Open in IMG/M |
Source Dataset Name | Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1805 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012403 | Metagenome / Metatranscriptome | 281 | Y |
F032478 | Metagenome / Metatranscriptome | 180 | N |
F035971 | Metagenome / Metatranscriptome | 171 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0256368_10071771 | F032478 | GAGG | MYWEVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQAMYPDKHVELD |
Ga0256368_10071773 | F035971 | AGGAG | MGNLTWNEVAQIETDKRYMDMYGLSQLGMEDMLHEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSDSGLVTTPTTNTNIQTN |
Ga0256368_10071774 | F012403 | AGGAG | MRIKSINPVAKALLQSRRRTQQVPDKTKYNRKKDKQSDANQVGKHEEPKDN |
⦗Top⦘ |