Scaffold Ga0256368_1005288

Overview

Basic Information

• Taxon OID: 3300028125
• Scaffold ID: Ga0256368_1005288
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2015
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002928	Metagenome	520	Y
F009178	Metagenome	322	Y
F013705	Metagenome	269	N
F040863	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256368_10052882	F040863	N/A	MENKKIEKLQKRINEITSILDGERDWNKIDSTALICERADKEFLLNKIGVNIRLTGNNKFYWGYQFVEFRKNIDKHGSNYGYKDIVGSKISFHKYSINQEYSQYSNDLWRFDSSEEMKGFVKGYNAMCNILESKQQKRKVA
Ga0256368_10052883	F009178	AGG	MTIDKNNEGAWRICEIINGYFETKVYYFYTKKEAMKLFRQYKKNLINQ
Ga0256368_10052884	F002928	N/A	MKKETNKKGTMKKNILVKFDIIAGEYEHSDNWIFDKKMSEYQYCKTFWGLTEKNELKKNVFWDNWESNAIKVHSQKEITNEQAKTLNELGVA
Ga0256368_10052885	F013705	GGGGG	MTNKLQNKIYELIKLEELHNIKEQYKQHEKTKGLYEMFDFKPLPQEIMDNANNDWEGE