Scaffold Ga0256368_1004123

Overview

Basic Information

• Taxon OID: 3300028125
• Scaffold ID: Ga0256368_1004123
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2191
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016061	Metagenome	250	Y
F028350	Metagenome / Metatranscriptome	192	Y
F035125	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256368_10041232	F035125	AGGAG	MKTAKKKITVRFVVEQDFEVEVRDSDLGMGSFFAIGDVMVSSGFDQWDVLTHDFIFDNPVGKMRPVHDGHLSDANLYNLGLHSEYIQPWLFEGETDKDPYEDEEIDT
Ga0256368_10041234	F016061	AGGAG	MSYITVKATNILNTLTGTKPSIDRINKRSFNHMGKYYVGLSASGKFLQVNDAKHVRYYGNPFHNLYRVVSKNGTDYVIHQAK
Ga0256368_10041236	F028350	AGGAG	MRIKPNIVNPVARAMAQSRRRSQAVPDKTKYNRKKDKEDANQNRSNEEPENPKG