Scaffold Ga0256368_1000625

Overview

Basic Information

• Taxon OID: 3300028125
• Scaffold ID: Ga0256368_1000625
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3770
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008385	Metagenome	334	Y
F026409	Metagenome	198	Y
F047918	Metagenome	149	Y
F072752	Metagenome	121	N
F079225	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256368_100062512	F008385	GGA	MLPIKTNIYGDYKVCIKCKNHADVIEGTKNYCIECWYLHINGKSIKEADQEIKEEERFIKKK
Ga0256368_100062514	F026409	N/A	MKYLILIILLSSCSFSDYDINPSTTIIKQLIKGSKNDKS
Ga0256368_10006252	F079225	AGGA	MTKKHISETSSMYKVTDLYNHNNFIHWTKDKKYTGESMSNINPFSESYKIYDLIDNEGFIYYEVYKMGLSKNKKELDNTNDILLLTTYDNKQVNKYMNLIN
Ga0256368_10006253	F047918	N/A	MITIKKIQGAFKTYYTLIDDATGLNVGLAKGKNWLIKRQAWNLCNNKDYLTNHKNTGHYNKITKCWFFDNDIENFMEEANQRMEIDTTLRLNNNQ
Ga0256368_10006258	F072752	N/A	MKLKDKIFKYIKECLGIEKKENSLIEPNRTEVVDLPKNLVINLNKGGKNGKKXIRLSNYK