NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256368_1000216

Scaffold Ga0256368_1000216


Overview

Basic Information
Taxon OID3300028125 Open in IMG/M
Scaffold IDGa0256368_1000216 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4897
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006939Metagenome / Metatranscriptome361N
F030435Metagenome / Metatranscriptome185Y
F053299Metagenome / Metatranscriptome141N
F059965Metagenome / Metatranscriptome133N
F086976Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0256368_100021614F006939AGGAGMTLPTNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNEKGRIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGNMV
Ga0256368_100021615F059965AGGMPLPPSMEMELMELGILKGDIEELESIADQTGFHETRAEIKAWHDTLILDGKVMF
Ga0256368_100021617F053299AGGAGMNNYKPYYRTDKMKQEELRTAKYITILFFMMILFSFIGFAFVLVKAMLYMTGLLL
Ga0256368_100021618F030435AGGMNNQDILDMCKRLANKYYNHQEYDDIVSEGVVLCLKLRAEGVTEPSKLYYNARTAMFQYVNVGMSKFSYPKGMAGRDAAINDTTVYVDVEEAQIPADDLFGSYELKDSIEVLKKHLTVREWKVFISLYNNNNSLTETSKDLNITIRGLINIRERVRNKLVTF
Ga0256368_10002169F086976AGGAGMSGDKIPPIDPKTGQFVRPSDGNKVPSDGNKVYKTEIELTRALLDNEIPHELYVELLEVYHVAYGDAPEYGFVGVGCISFAEAMLQDHQGAVVKPIRIPRLYTDEDFNKENEE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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