Scaffold Ga0256368_1000044

Overview

Basic Information

• Taxon OID: 3300028125
• Scaffold ID: Ga0256368_1000044
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7567
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046974	Metagenome / Metatranscriptome	150	N
F077258	Metagenome	117	N
F079926	Metagenome	115	N
F090391	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256368_10000441	F046974	GGAG	MAGRPLRKRILNEIQEKGGADYLFEEIASGKTITELAKEYGCNRQYLSTTINNVPEYSQALSKARQEAADALVEQGLTMVDELDGGSSSSEIAATREKVQWRKFMAGSYNQD
Ga0256368_100004413	F077258	GAGG	MAVNAKTIKQIKSAAEQGLTQAETARLLDMNESFLARTKSKYNIEFIKHEEKYARFRSPQNDNEINQDELVNDRGHEKPRPDQGQEILQVVFRRAASLDGKYGVETEKPPKNIEELKERLNQNDKKHHYEIIYSYKMQQFEKQQIKLGLRTPLHKGRKIQSLSTSCANKNISLNSQSFPAKHEIAKQQRILKSINRGGRYTTSMVARNTGLSVSFVAPQLNILYSQGLVSRNNENQKPFIGSIEGKKSWRYVYFAKKIK
Ga0256368_10000446	F090391	AGGAG	MKDTVKINRDALEQLTDFVRKDIEVSHLETSDNQDLKYIVDVTDALMSAKYSLELYKQKANAFIELKYLQFLTEHTQDSFDWIAPDTDWNCLSDMLATNLLASAILQARQAMQIEPETKEEQSE
Ga0256368_10000448	F079926	GGAG	MNSKIVAQPWYDMAVKSKFSIQVDEITFHILDELGKPIINDDFTPMKFRSLLELDFITDYIDLDDLEVIQ