Scaffold Ga0256372_1034890

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256372_1034890

Scaffold Ga0256372_1034890

Overview

Basic Information
Taxon OID	3300028123 Open in IMG/M
Scaffold ID	Ga0256372_1034890 Open in IMG/M
Source Dataset Name	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	566
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034571	Metagenome	174	Y
F063691	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256372_10348901	F034571	AGGAG	MSREHFVESHLEDRVNELIYIDNLSEEDAIQTATSEHDGQVNLVEDKALRINEKQMAIQKELRQGLYPSEIVLSKVVDHLQAHYNSDSESTVVKEFCRELLKKINDDTLEVANAE
Ga0256372_10348902	F063691	GGAGG	MQSEISQCWSCKSIFHVSELMVTEDGKDCPLCCTDNLVNIDDLPEDREDR

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