Scaffold Ga0256372_1020494

Overview

Basic Information

• Taxon OID: 3300028123
• Scaffold ID: Ga0256372_1020494
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 756
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015532	Metagenome / Metatranscriptome	254	Y
F046006	Metagenome	152	N
F053545	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256372_10204941	F015532	GAGG	MILNKEDTIVRAKIPDRMMSTTFTLPIDDRKVVGIVNYTADVNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQ
Ga0256372_10204942	F046006	GGAGG	VKEYSPPLAKYINTSLLMIVWFFCLSLLVVNFRYIAKLDNTINTMWHEIEQVKDTNIKLYQFIEEHGNDFK
Ga0256372_10204944	F053545	N/A	ATHNGYVMLPIEHTRKNVEGGRESKIKWSGETLPEVGK