NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0233397_1119452

Scaffold Ga0233397_1119452


Overview

Basic Information
Taxon OID3300028111 Open in IMG/M
Scaffold IDGa0233397_1119452 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 35D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)640
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020386Metagenome / Metatranscriptome224Y
F071273Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0233397_11194521F071273N/ADFLLEGDYTSTLNNFSSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKY
Ga0233397_11194522F020386AGGAMPISRNNFTSLPVAAELEGVDVSYFTVDFINAMNSETGDPQADSTAAGLALVEQAIMNQGINILATGPLGNSNTELTYMVRADSLDVANHITANGLRDAIRAVDTAGRAASATPRNTANFSAATVTAKTLAIAV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.