Scaffold Ga0233397_1004406

Overview

Basic Information

• Taxon OID: 3300028111
• Scaffold ID: Ga0233397_1004406
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 35D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6025
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008104	Metagenome / Metatranscriptome	339	Y
F010570	Metagenome / Metatranscriptome	302	Y
F077784	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233397_10044061	F008104	N/A	MGLLSNISEFFASNTYVQATEHSIATNELENSIEDLNGRYRLGHTLVGDYIKFGVNDDFPVILEKMLRQSPVHSGILTKKAKMVVGKDVDYSDEFAKTNKAKAELKAFVNHCGGNNKGLYEVLTHAAFQYEHKGALAFYVRWNKGRTKILEFKSLDPKGVRVAEPNEKGEVTHYIVRRSFGYGSNSVQHNEPRKIKAFNKFDKSGTEAVLYVGN
Ga0233397_10044063	F010570	N/A	MKTFRKYSFGSKGAATTKINALGTETTPEGDVVPNHPHAIVHLGNLVETEGTYDDEGNELTAPVLSSTYHIDVLWDGEALESWDSAMVWCAPMGIHTFGSSSAIAEWTEACKELHPEYFPEPSEDELV
Ga0233397_10044069	F077784	N/A	NGLGVVSTDITIQTPAVDNKVNQIDLMSRREDICCVLLHNNDTVTISGWMDGLTMNYEANSGTGTGEKSYVNITLNTESGIASLAINDKAVFSDQTIFD