NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247584_1066971

Scaffold Ga0247584_1066971


Overview

Basic Information
Taxon OID3300028110 Open in IMG/M
Scaffold IDGa0247584_1066971 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 43R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089818Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0247584_10669712F089818N/AMARVFSALVLGAAADTLASCGADTDHLKVTSITTDADATGGPRKGKPFTVTVEGEFDAAHQHGTVTGDLNVVALGVVDEPVSFDQKYDFLPGIASGPVKVTVGPFTFPRAVPGKVDVSGRVSIVDENKEPVLCLDLALLIPKILAEEEPALESGDACGDATSDHITNIQSETVDDVTTTTMDLDEALGYVNLKVDLSVKAPVVPAVNLKLTQVPISLSPAIPAGQLKFVGYPSDSLKSGVQSLVDVTGSLILEDTNGEEVVCVGLGDDANAISV
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