NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247596_1157847

Scaffold Ga0247596_1157847


Overview

Basic Information
Taxon OID3300028106 Open in IMG/M
Scaffold IDGa0247596_1157847 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 66R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)518
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086478Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0247596_11578471F086478N/ALRARGVLDTFAGVFDKPLCQCSCCIVERRNPSEVDGSVTAKCAVMPDNDPRRADFSCPNECTVINDPVLSNTNVVATQRFCFYQCMAALPTYPDVQVAANNSADRLTVDTGGALTDSVCTAIPEESVEAAVASDGNGRDAEEGSR

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