Scaffold Ga0255172_1027328

Overview

Basic Information

• Taxon OID: 3300028103
• Scaffold ID: Ga0255172_1027328
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1081
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041724	Metagenome / Metatranscriptome	159	Y
F048943	Metagenome / Metatranscriptome	147	Y
F063623	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255172_10273282	F041724	GGA	MADRLELNSRGSFLDDENQMVVDATVIEIGQKLFEDWNSSNLDEGTFYADQQIAILSDDPYLKDKFNKHYELNEDDDDFLN
Ga0255172_10273283	F048943	GAGG	MTFLIEYMKAHLISIEQDQESIASQMELLDPSSKDYQELDFEYNWLGGQIIATRHFIQIGEEHAANNN
Ga0255172_10273284	F063623	AGGAG	MQPITTELPDNLQKQVDLGSSGLDIIHGELKWLMKEAEEQLELAQEAENKSGEAMDSMDRKYWEGQLDALAHLYGLTYQLSFAIEERKNANI