NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255172_1027328

Scaffold Ga0255172_1027328


Overview

Basic Information
Taxon OID3300028103 Open in IMG/M
Scaffold IDGa0255172_1027328 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1081
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041724Metagenome / Metatranscriptome159Y
F048943Metagenome / Metatranscriptome147Y
F063623Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0255172_10273282F041724GGAMADRLELNSRGSFLDDENQMVVDATVIEIGQKLFEDWNSSNLDEGTFYADQQIAILSDDPYLKDKFNKHYELNEDDDDFLN
Ga0255172_10273283F048943GAGGMTFLIEYMKAHLISIEQDQESIASQMELLDPSSKDYQELDFEYNWLGGQIIATRHFIQIGEEHAANNN
Ga0255172_10273284F063623AGGAGMQPITTELPDNLQKQVDLGSSGLDIIHGELKWLMKEAEEQLELAQEAENKSGEAMDSMDRKYWEGQLDALAHLYGLTYQLSFAIEERKNANI

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