Scaffold Ga0255172_1021216

Overview

Basic Information

• Taxon OID: 3300028103
• Scaffold ID: Ga0255172_1021216
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1246
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027449	Metagenome / Metatranscriptome	194	Y
F052590	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255172_10212162	F052590	AGGAG	VIVTSLEKMEKIVAKHDNLAWVGWDVVDRKRSESGRTSTSGMRVNGLWYLQRTYPVGKNGWDIPNKYRP
Ga0255172_10212165	F027449	AGG	MYTDAMRRAFHNIIAPKNFKVTLVDNDTFLTIKLDERSFLPLTHDEKIEAVKYVTQIKKALEMEGAIVLVTREPLQ