Scaffold Ga0255172_1002781

Overview

Basic Information

• Taxon OID: 3300028103
• Scaffold ID: Ga0255172_1002781
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3791
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008619	Metagenome	330	Y
F023109	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255172_10027813	F008619	GGAGG	MSFQTIFEIQQFMTVNNRRVVGQQIARSGYITVAQYLTAVPWVFTVMPHNYLYYPQVRDIIQTIDNKDRQLPETIIFNSSNLSWFTKYQGDVVAPVFTLASTPTPNTQTLSMNVTSGAGYAFKAGDFCMVGGYTYKVTQDVLRGTGVASVPIHRPLIGTPASGATVYVGNDCSFNVVAERCPTYTLNPMTNGAFVQWDDAFVFREYIT
Ga0255172_10027815	F023109	AGGCGG	MIRLATRYDIPRLLEIVEAYAYENPIKVLGRQHNHFPKYVEELLFSIIAGRGFIYIDEHMRGAIVAIKQGNIWAPKVKELNELLWWVEPEHRNGTVGGRLWKAFDDRAKAMLKAGDIDFVVTSISANGPLIDYTKRGYKAL