NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255349_1029411

Scaffold Ga0255349_1029411


Overview

Basic Information
Taxon OID3300028090 Open in IMG/M
Scaffold IDGa0255349_1029411 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1236
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055365Metagenome138N
F066377Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0255349_10294111F055365N/AGFGILMANVLQSGLLHNGDVYGLLSQGITAYPGAVDGDGAMTTTSLGLMSAIASILVGHVNKVSHKNPHGITLPDLGLTISYDFVANNGYIKFAMGTNVFMIQWGTMASVGNSAPGSSFSFNPAFPNNCFGVYGVAVCLPGFDSGFFVLSDTPSTYGFTAYVGGPPSARTVYWIAVGN
Ga0255349_10294112F066377GGAGMPPTGIQTFYYGKNLPARAIAIAQVTAEDVSPADLIDIVNTPYLPGSLGIWKASEGLATSPNFTAPDYNQSVTITGDVLYMVQNQFFQITNQFAADGVTPLYFYHNFGQSVSGATILNLDGSVVTPAPTVLFSGNWMYHDVPSTLAFQVRYVDSAGRVKISLLHYNQVMPLSTNGDTSKGYAFTGGMIELASAAVSYSIRFLVQNGYQALPPYEAPSYLPWFPRVRF
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