Scaffold Ga0255349_1011408

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255349_1011408

Scaffold Ga0255349_1011408

Overview

Basic Information
Taxon OID	3300028090 Open in IMG/M
Scaffold ID	Ga0255349_1011408 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2318
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3529	Long. (^o)	19.0475	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039920	Metagenome	162	N
F044872	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255349_10114082	F039920	GGAG	MIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPGAAMEKTLQAVLARPAKPKFRRVAPEANHNSVRCIGLDKLKF
Ga0255349_10114083	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSNDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGDCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLTLWTVYAENSAAHPESTSDILGATLTESIQLLEAA

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