Scaffold Ga0255251_1000274

Overview

Basic Information

• Taxon OID: 3300028088
• Scaffold ID: Ga0255251_1000274
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5229
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045549	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255251_10002746	F045549	N/A	MASPSEEINPLEQLRALRTEVIDRERTRVRGLLDEVSTSEQETSGETTTPEPSVPTAEDSEAASERKPRKGKAVRRPASLEGEELKIRLGTELRRLVAQQCHTDGWSVNDLVSSVLRSALSARSPSIWHGGTALATANVCRFWHRHPMDTALRLTSDKGVFLITTNPASPLFKHWKEHYTLLGMPDCDRMARQMRLIQLQEWVQSVDDFDVDDWRKPLSEEDYMVTRAVVSQQDAPTDAASRDDETSPSSSSP