NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255356_1030453

Scaffold Ga0255356_1030453


Overview

Basic Information
Taxon OID3300028084 Open in IMG/M
Scaffold IDGa0255356_1030453 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1166
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006748Metagenome / Metatranscriptome365Y
F106160Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0255356_10304531F106160GAGGMNISETAILEADRARWKMPSIPLPAQARTAILFACSTAIGAAGWSGDTVLNYFALLFPYVYLQSRRRLDSLCAVFYYAAATW
Ga0255356_10304533F006748N/ALPLTFFGESALVAKTFQKGDNIHVTGQLIRREPRPRIDGESAVREVGTIFEIHVIRSFRIAASSKSETAAIHQNEIRRTNDAKQIPAFLQESIHDWPV

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