Scaffold Ga0255356_1027170

Overview

Basic Information

• Taxon OID: 3300028084
• Scaffold ID: Ga0255356_1027170
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1305
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038518	Metagenome	165	N
F042119	Metagenome	158	N
F080768	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255356_10271701	F038518	N/A	NLSIVAMHQRASCEGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDVLSAIAELEPKVAALSQIIGNAIQ
Ga0255356_10271703	F042119	GAG	MEIIIREVNPARLAWGTFDHAKSDYMNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCSLRVFNGTPTNYHDKSGSAERAEEARNDPNGFYDRMTVKHGGQEFVLCGPEVQFVASQHEDIFAPQVQLALF
Ga0255356_10271704	F080768	GGAG	MLGHRLNPTIHRYKEVELIEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLG