Scaffold Ga0255356_1027113

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255356_1027113

Scaffold Ga0255356_1027113

Overview

Basic Information
Taxon OID	3300028084 Open in IMG/M
Scaffold ID	Ga0255356_1027113 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1308
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3529	Long. (^o)	19.0475	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003942	Metagenome	460	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255356_10271132	F003389	GGA	MQITVWSVAADDNNGSYASVHETESAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDGLDEWIHEEVIEPLNTYSVDQHKIDLPTTLSSADDGKHITRRELASVLHGLRLMQEQWEPRMHGCTSVGLHDPLELSEPNSCDHFCDEEDSPLSPGEIDELCERLNMEFCN
Ga0255356_10271133	F003942	GGAG	MLGHRLNPTIHRYEDVELIEIHSEYLECSFMVARDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEMQRQAGHAIYADHLSAMLYGTGLNPARS

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