NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247675_1052240

Scaffold Ga0247675_1052240


Overview

Basic Information
Taxon OID3300028072 Open in IMG/M
Scaffold IDGa0247675_1052240 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)609
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036945Metagenome / Metatranscriptome169Y
F062936Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0247675_10522401F062936AGCAGMASFAQFLGRKVTVQYRVGDVLLPASGTFAADSGRSIFLEQHMEQRGKRNYFRWEIPYQYIHRIEEAAEVAEPAAAPQSAAAAQPENS
Ga0247675_10522402F036945N/AWTATLVDSYEITCPACHAPLELSRFTRIFGGFGGVAGAFVALYLGHGLFHGWFWAMPVAAAILAYGIFSALFVLIAGDLVVRPKPAAQGFPHPGE

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