Scaffold Ga0255355_1002761

Overview

Basic Information

• Taxon OID: 3300028068
• Scaffold ID: Ga0255355_1002761
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6656
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057821	Metagenome	135	N
F098449	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255355_10027611	F057821	AGGAG	MSIDMNLLSVNADALSTNQNSELPGWNVPSHMAFHIVFDGRLDINGKLDPVIRRPYRDTSRPYNQRRDFMAHETRQVLDDRMPAGVEYGIVTFDGGSKAAREETRRLVEHLSRGWTDNGKRFRCVYGHAADTGFMLFVDAKSSIHGPDDLGIHISSDPKAAKRVRRFFSAHSLMLKGRVIDRAKSPLGKQYA
Ga0255355_10027615	F098449	AGGA	MNRNFNINGLHSAGTDAGLEPARAQAFVPLVNGGGLIESVTEEQSMQNGAEVESAGRTGKGGRPRKSYDFLIGTVHHFLVIDRIFRRAQNEPYAATTCTRCGTHTECRLRDILSGHTKSCKCLRPEQYLANVGAQADQLPEQKVAQIWSMHFSGAGRRAIAIEHKLAVIVVDFALRRYQRILDGIINTGRALLMATRAVTPQVRDYLRKAEYRLPHHRRHVHRRFRPRRLGLRPSDGRALNRTH