Scaffold Ga0255192_1015615

Overview

Basic Information

• Taxon OID: 3300028067
• Scaffold ID: Ga0255192_1015615
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1170
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011389	Metagenome / Metatranscriptome	291	Y
F011830	Metagenome / Metatranscriptome	286	Y
F064652	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255192_10156151	F011830	N/A	PLMATYKTATKQLLDNYACISTLEPSEIALGESVAVSGLAAPFTGTFTVLALPQYQFEGVDAETGEFLYNTNVAVPNQLLYACTGTAVEFVADYSGVVTYTQTCTWITATDIEDWIGIGTATAGDTTFLTICAAASNAFCYRRRQEVGYADSLTVVPSQDVKLATVMYGGALYRQRGSITDFASFDGMSTGSTNGLSPLVKQLLGVDRPQVA
Ga0255192_10156152	F011389	AGGTGG	MPVAFTDLFNEALDDLTATLVAATGMPAVVNDPRNMQPPCVFIDAPSFDAWNYNIFKLMFPVKTITLGPANLDAQRSLLNIMSKVLAANIAVTDGRPTSTLIGGVEYPSYEVTANVQAQT
Ga0255192_10156153	F064652	AGGA	MANYLVTSTRLAGFKPGDVVTSTDLDGVNIEALIEGGHISTQTAKKSAKTKD