NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0268332_1021495

Scaffold Ga0268332_1021495


Overview

Basic Information
Taxon OID3300028058 Open in IMG/M
Scaffold IDGa0268332_1021495 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)792
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000255Metagenome / Metatranscriptome1449Y
F080746Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0268332_10214951F080746N/AAPNPLYWTLNSCFGALHSVWVHLVSFHKRMKLDAKQGELVQLMRKLVPRSHAGIFLNEST
Ga0268332_10214952F000255AGGMGSKLCVRREKSRRDFVARAFALIALVHPVLHQVSLGYEMIPNAPKHYATHQNMSLGSNGVDWVRSLQKIPT
Ga0268332_10214953F000255AGGMGRIGCVRCEKSRRDFVARTFALIAPVHSILNRVSCSYETIPNATKQCATHQNMSLGSNGVETVRS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.