NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268332_1007445

Scaffold Ga0268332_1007445


Overview

Basic Information
Taxon OID3300028058 Open in IMG/M
Scaffold IDGa0268332_1007445 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004718Metagenome / Metatranscriptome426Y
F046127Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0268332_10074451F004718N/ARSVSVHLAMFRYYTELGAKWVELVQLMDKFVPLSRIGIFRNECTRSTPLDPKLKYWFVS
Ga0268332_10074452F046127AGGMGWIGCIRCEKFQCDLMAQTCPLIAPVQPILHRVPCSNETLPNAPKHYEMLQNMSLDPVGWIECVLCEKFRCDFMAQTCALIAPVQPVLHRVSCSNETLTNAPKHYENAPKHEFRVQWGGSCAFVARNSYASSWLELLH

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