Scaffold Ga0268330_1000935

Overview

Basic Information

• Taxon OID: 3300028056
• Scaffold ID: Ga0268330_1000935
• Source Dataset Name: Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1906
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012742	Metagenome	277	Y
F039924	Metagenome / Metatranscriptome	162	Y
F060544	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268330_10009351	F039924	N/A	VHSGPFNCLTKLGAKRAELVQKYVPQSRVGFFRNEGTRSNPCDTKLTFWCVRSIWVHSGLFGCLTKLDAKRAEHVQKFMPRSRVGIYRNKSTRSTPLDPKLTFWCVSYYLGAFGTARLPYETRSKTGRTSAKVRASKSRQNFSQRTHP
Ga0268330_10009352	F012742	N/A	VHSGPLGCLTKLGVKRAELVQKFVPRSRVGIFRNERTRSTPLDPKLTFWCVSYYLGAFGTVWLPYEFSAKRAELVQKFVKRIRIGIFRNERTRSTPLYPKLTFWCVLYYLGAFGTAWLPYETRCKTGRTCAKVRATKSHRTFRNERTRSATLDPIITFWCIRTIWVHSGLFGCLTKLGAKQAELVQKFVPRSYVGIFRNECTRSTPLDTKLTFWSVSYYLGAFGTVWLPYETRCKTGRTSAKVCATKWRRNFSQ
Ga0268330_10009353	F060544	AGG	MGWIRCVRCEKIRRVFVARTFALVQPVLHLVSYGNQTVPNAPKYYKTHQNVCLGSNGVDRVRSLRKIPTRLRGTNFCTSSARFAPSFVRQPSGPECTQIVRNAPKRQFRVQWGGSGAFVAINSDATSWHELLHKFGTFCIEF