Scaffold Ga0268330_1000738

Overview

Basic Information

• Taxon OID: 3300028056
• Scaffold ID: Ga0268330_1000738
• Source Dataset Name: Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2057
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005624	Metagenome / Metatranscriptome	394	Y
F026476	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268330_10007382	F005624	N/A	MGWLASFYFQKVQKPKIPSPLAKVVADTPANMRSEGYCCPFSIWLEPVRVEILEFHVRITRKEDERVILKFYPLRFSDSEPWNPIFISLPCAGALDQKGDEEAP
Ga0268330_10007384	F005624	N/A	LSPLAKVVADTPVNMRSKGFRCPSLIWIEPVRVEILEFPVRSTRKEDERVILKFYPLRFSDSEPWDPIFISLPCAEALDKEGEEEAP
Ga0268330_10007385	F026476	GGA	MGPNFQKFTMFISTRFRRRGGDTVNLVENSQLVKILSFHSYGLVGFILFPKSPTAQDSESYSESCGRYTGEPAFIRFSLSFLDLVRTGKG