NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268322_1026944

Scaffold Ga0268322_1026944


Overview

Basic Information
Taxon OID3300028049 Open in IMG/M
Scaffold IDGa0268322_1026944 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000285Metagenome / Metatranscriptome1374Y
F011469Metagenome / Metatranscriptome290Y

Sequences

Protein IDFamilyRBSSequence
Ga0268322_10269441F011469N/AMKLGAKWAKLVPKFVPGCRVGILRNEHTRYTPLDPKLTFWCVSNYLGASG
Ga0268322_10269442F000285N/AKLGAKRAELVQKFVPRSRLGIFHNERIRTTPLDPKLTIWSISYYFGEFGTIWLPYETRGKTGRTSAKVRAMKSRQNFCKERTQSTLLDPKLTFWCISYYFGEFGTVWLPYETLYKTGRTSANVRARMSRWNFT

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