NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256405_10060533

Scaffold Ga0256405_10060533


Overview

Basic Information
Taxon OID3300028048 Open in IMG/M
Scaffold IDGa0256405_10060533 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3055
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089645Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0256405_100605332F089645N/AMDYQLFSKCIRFADAHKTSKPNIYFFLKDCAIQRVFKDNGNRFPTPDCQNICNQFQMEMQQAQWQRNKVSKKEYQDFLEEIFKKVDFSKIDLESYQILKALTENTGIFGNFDQLTAKRIEYINQKIQKLMSSPQPGANTMNIFSILPMPGASAGAPNMENAAVDLPDAGKGDTKAKKINDAEMARLNEIMKQMKLNSPIYITNVQPGQFYNPYVNVNYVPNGVNTNIPLPMRKTDPNYHHLKAIIEKELILANQELDYHKIDMARNHLEIAAYYLKNIID
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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