Scaffold Ga0256405_10000398

Overview

Basic Information

• Taxon OID: 3300028048
• Scaffold ID: Ga0256405_10000398
• Source Dataset Name: Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 144619
• Total Scaffold Genes: 122
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (34.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013263	Metagenome	272	Y
F023770	Metagenome / Metatranscriptome	208	Y
F096242	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256405_10000398104	F013263	N/A	MENQEFKTTNLKELRELRTQEKAIKARIDEISTEATNEAVAILAAKGLEKGEFTIPGVGTFQLQRTEVFDFADYNKYKQEQAVKWRENAKEKVKEQNLVKARTAIMNGYVKTFVELYPDKQPDEIKLTVKVID
Ga0256405_10000398107	F096242	N/A	MLLKLIKTRQFISGAHCEVWEMNHLTGNRLLANVFVLNEHLPLELIYRLTVHRTGIFIQGKLCGWQWDCQNVETAVTEYLQSVQEIHEEIRIEVCVPEPFLPGYPHVDRNPDDYPIVLGDFD
Ga0256405_10000398109	F023770	AGAAG	MAKVEFDPGIDSVRGILMGTDPFYIRRYPGREGVMHIVQARPNRSDHIPSAAEAHTRIVFAQKYGHEKHLAFLERTMKGQLQLPFEINPVDQ