Scaffold Ga0256405_10000024

Overview

Basic Information

• Taxon OID: 3300028048
• Scaffold ID: Ga0256405_10000024
• Source Dataset Name: Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 409537
• Total Scaffold Genes: 607
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 157 (25.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051619	Metagenome / Metatranscriptome	143	Y
F057815	Metagenome / Metatranscriptome	135	Y
F072887	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256405_10000024301	F072887	N/A	MEKCMRCGHEIIIGGNFMLSEINGEILAEEDDAMVTNASCPYCGARYELYDTPQSEKKNYPYWNNVRGL
Ga0256405_10000024449	F057815	AGG	MAKKIKDSDILKAMAMHLDEDSVVFGANGHYAVGAYYDITKVNSVFGDKDYNSQDAIDAADSTEAAAKYRTDDDKMIESFQKAEWLKDF
Ga0256405_10000024598	F051619	AGG	MNNSTVNWEEVRINAAISVMNSILSSFILLFIFQFVFKRQVADIAVEYADKLIEELKK