Scaffold Ga0209526_10177001

Overview

Basic Information

• Taxon OID: 3300028047
• Scaffold ID: Ga0209526_10177001
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1485
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F001448	Metagenome / Metatranscriptome	692	Y
F010717	Metagenome / Metatranscriptome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209526_101770011	F001448	GGCGG	MKKKKERRIYRPRLVGGKVMLPADLHRLHQYMLEVERIDLSDEMRAVVESEWPELAYKLPPKSSI
Ga0209526_101770012	F000037	GGGGG	VTSLVLKGATASPPSGEWDDDDYDVLEDSAVVGRIMKTAAAHVGTPWMWTLAFGHHVDRSPTHGYAATREDAMAAFAKSWRRE
Ga0209526_101770013	F010717	AGG	MVARRRRKRSLPPPRHRALELLASRRDGCTEAIMIAHGFTVPQMVELVRTGLATAHTRRAIAGRRTIEIAYMKITEAGRQALAGGAKP