Scaffold Ga0209526_10072533

Overview

Basic Information

• Taxon OID: 3300028047
• Scaffold ID: Ga0209526_10072533
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2422
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004592	Metagenome / Metatranscriptome	432	Y
F022707	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209526_100725332	F022707	AGCAG	MKLLSRRALEELGALQDIMQDLAAHRNAALRMFITSRNTTTLVAQREFWLEFSWIDQEYRAAVRKLAQFCLRYRDTAQNRFNPL
Ga0209526_100725333	F004592	GGAGG	MSASEDLRAEWLGSQFWDRLDRLEGRHQRVQSEHETVRRNLERVTPREADELRHAWRRYCEVIAELEQTTAEFEALRTFTG