Scaffold Ga0209526_10018634

Overview

Basic Information

• Taxon OID: 3300028047
• Scaffold ID: Ga0209526_10018634
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4825
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F013395	Metagenome / Metatranscriptome	271	Y
F051385	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209526_100186344	F000739	GGAG	MMTRVELWLKGLLAAAISGAAGGVLTGFAAVGIDPQHFNLQAGIGATFRIGVAAALINAVIGVAAYLQKSPLPSGE
Ga0209526_100186345	F051385	GAGG	MYGHNWLRIASGLALLFSSVIVVAQSLLRSEFSNQLYYGTTLIAVFGYLFLTSRTKEEERDSPWWW
Ga0209526_100186346	F000512	N/A	MIQILRETHDTPESVAHSLELAGGINRFREPNYRAVWGWNRLAWIGGKFEEHDPATGSLLREVVELRQEPKYPAVNRWHIEKWLPPESYGSPRAWWAQTVEVQGGRSIPALGPYPARGEYEHCFTLEGPRSEFVQLTPTVAEHIARAIEWSRHHPRSAGKRALKDREQRQEQAYDTWAYDLLDDAVPAFHRQPFVAVG
Ga0209526_100186347	F013395	GGAG	LLCGAIAARSKTEPLLFVFLRVDHEHDIAILRPMIAPDVGVQLASGPRQLAPGTVLACEMVAREHDAIVEGEVSKVSEIVLDCGDHKFVVKTLDFRPQRK