Scaffold Ga0209526_10002529

Overview

Basic Information

• Taxon OID: 3300028047
• Scaffold ID: Ga0209526_10002529
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12331
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F006633	Metagenome / Metatranscriptome	368	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209526_100025291	F006633	GGAGG	VSQHSIELRRQTVIVFTTALLVFTLAAPLSAQEKRAPQTAGVDNTKMGPYRALAQLAYAASQKGDHAGAATLAVILERTWDKAEDYGGDTALSKTHHSIYEQIDKAMDQFIALFLDHPSSAPDGARLKAAYNQYLEKLKLAD
Ga0209526_100025297	F004042	AGGAGG	MNAKKFALLALLGCALGPVSQAQIKHIEMRVEGMT
Ga0209526_100025298	F000092	GAG	VKQHLGRQSGVQSVEVSLNDGKVDVTPKEDGRIDPGQLFKAVYESGVSVAEMDVLARGKVVKDGSGGFALDVTPNQSFGIEANDVSKELEALAGQSTVIIVRGQLYKKPAGKKRQKPDISAPMKLLILEVQKRE