Scaffold Ga0265349_1000025

Overview

Basic Information

• Taxon OID: 3300028037
• Scaffold ID: Ga0265349_1000025
• Source Dataset Name: Soil microbial communities from Maridalen valley, Oslo, Norway - NSE1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17001
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9979
  • Long. (^o): 10.7895

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003375	Metagenome / Metatranscriptome	491	Y
F013584	Metagenome / Metatranscriptome	270	Y
F097836	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265349_100002510	F013584	AGGA	MLWAGEDPALHSSLIEELQSAGIPFIDRPTGDDQVPPSADILPIDWKTQFGFEVAVPSSNRAAAEKILERLLDQEPADMEIAANDSAQPGVVDVKPAHLSATTCAVWSGADETRARFLVEALKENEIPARAETRGSEATVYVPPEEEMLAREIIREIVEGAPPA
Ga0265349_100002515	F003375	AGG	LLLFRLDVILPFAVFNRCEMYSAAGLAISCPEHARLESEFIEARDRMRGLVRLRNLSQAEERQLAVRVAMAIARLKEHVAAHGCERQG
Ga0265349_10000259	F097836	N/A	MFCPNCKAEYREGFTRCADCDVELVYELSAAAIIPIEPIDPGDPVEDPFCSFWKGDDPRVHAELCELFAEQDIPYKTIRRQDHLFNWNTKSAFEIGVPFSRFDKAEAVVKEAYGGDEEPVSEDVARTLELPEVVEPREPHPARGPGDCYPEDATLEIWEGKQEEMGELLAASLGENQIHSRMAEAKGTYRLFVLPADETRARKIVREVVEGVPPE