Scaffold Ga0265355_1006289

Overview

Basic Information

• Taxon OID: 3300028036
• Scaffold ID: Ga0265355_1006289
• Source Dataset Name: Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 927
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9982
  • Long. (^o): 10.7894

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004122	Metagenome / Metatranscriptome	452	Y
F015781	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265355_10062891	F015781	AGG	MNSAVDTMVAAPASSEAQLPSRVLEIRPEESKLVCVGADGREFALSRLIGSNLRIGDELLAPASAGTAIADTEIYIRKPSLRRADVYQVKA
Ga0265355_10062892	F004122	N/A	MTENGLSDSGCRSAELRYEWQSFLGLLPVLDLRPTDLVLYQRCQTAVWRSRKSAISRTDLQQAAGLGFQAETLGFDLLIAQLVRDRILEPIVSSPFHFQIRRWNWTNPESVYAADDRLSLIAISREEQTARLRMVGVLSARISNSRLPEKRVQQIRKERDELERIYEATWLELDNAIGSKAAEAIRKSVEETTEAG