Scaffold Ga0265355_1001520

Overview

Basic Information

• Taxon OID: 3300028036
• Scaffold ID: Ga0265355_1001520
• Source Dataset Name: Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1519
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9982
  • Long. (^o): 10.7894

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F013924	Metagenome / Metatranscriptome	267	Y
F070360	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265355_10015201	F013924	GGAGG	MNEHLLDPKFIMLAGVVILVIAVVAWMYVRKRRST
Ga0265355_10015202	F070360	AGG	MLVLTLKEALMKSRPFPEIPCLICGKPIDLSVDLSADENGKAVHTECYVKRITTPQAVPSIAMMAD
Ga0265355_10015203	F000065	GAG	MTHGTNKPTRKLRKASQPPLPHAGAIPDSDRAKRPPLSEASATGPELSPGDRVEGLGNFGKPNGEFGTVERTNEDDAVVKWDDDGRVRLHQPSLRKV