Scaffold Ga0265292_1000018

Overview

Basic Information

• Taxon OID: 3300028028
• Scaffold ID: Ga0265292_1000018
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 296A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 488619
• Total Scaffold Genes: 463
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 438 (94.60%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040026	Metagenome	162	Y
F050314	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265292_1000018209	F040026	AGGAGG	MPYTTNGSGFYFLQSAYLNVLEDEGVVSPETALPLDEIDSLINPFVRFGGFGQGWLVVNKLSRYGVLQACSGKRYYLDQNAADQFRYSFARWLPW
Ga0265292_1000018253	F050314	GAG	MSDALHLVRPDLHVALDCPADWTIMEMDEQAGLRVSDPADPRVALQVTYDDSGSPLDETSERLRNGLPEDTPCEQGTLRRGGVDADGRASPDGPPVKALTFSARDSSFVYQVLVAEDTGHRWTVRLETLQRKEWWQQSRTLETMLASLLLL