Scaffold Ga0247722_10009224

Overview

Basic Information

• Taxon OID: 3300028027
• Scaffold ID: Ga0247722_10009224
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4363
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F011844	Metagenome / Metatranscriptome	286	Y
F103223	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247722_100092242	F004112	GAG	MIRGSESRKVDTYKQTRLLMFTMVRLMGDPKTAPKTPEALWQLPGDEESENVMNDDEMREIFKRLGK
Ga0247722_100092244	F011844	N/A	MGQILGSLQNVEIDVAGASSYKTLVCLRTSSVNTTVDSTTEQTNCGPITSVANATMGLDFDAICEVSPTGQQISYEDLLVAMRGKTVVSVRVQNPAITGSSEGTVYYHQFLGYITSLTFNQSTTEFINFSGTITSTGSVNVAP
Ga0247722_100092245	F103223	AGCAG	MKDCSNNIRVQYLSKLNGNITYGGKNVPVYGNDTFETMPQNYIIIGDITESADNNNQLFVSMADVVIDIFSEQYMTRNNSIIDDIADQVLTLLIPTTGVQDMGDAEFQIYAKARTSSRYLTMQEGNNFINRKILIINNSIIQK