Scaffold Ga0247722_10008379

Overview

Basic Information

• Taxon OID: 3300028027
• Scaffold ID: Ga0247722_10008379
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4622
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F007518	Metagenome	349	Y
F104769	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247722_1000837910	F007518	AGGAGG	MTDWTKEEDEAFNAVEQQSNLGKQILKAQGQPYHFDTYVSPSQRNHVLEEVALEFEKMPFGDTAHSFAAFVRGMKQ
Ga0247722_100083795	F000166	AGG	MTNIPTPEDVKLFAQSVRKWQQVLSLGDWRIEKGSKPAKSAMASVEFNTSARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEVEMQEHRVINLLEKLLSKDSNGRT
Ga0247722_100083798	F104769	AGGAG	MKFEMEFGIFNDKLVIETTDFDIIKIFQEFVMFQEAHGWAVNYEAVDCDEDEEIPPFALDTHEPL