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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028027 Open in IMG/M |
| Scaffold ID | Ga0247722_10005703 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5779 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: West Virginia | |||||||
| Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003888 | Metagenome / Metatranscriptome | 463 | Y |
| F009252 | Metagenome | 320 | Y |
| F033698 | Metagenome / Metatranscriptome | 176 | Y |
| F054611 | Metagenome / Metatranscriptome | 139 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247722_1000570310 | F003888 | N/A | MILLKMAITYLSYNIYMDVVSEIEVIESDVKDVEQKCKKVNCGAIYDAIIASLKLLYDLIFVCTKKKT |
| Ga0247722_100057033 | F054611 | N/A | MADIDEERLQILMELVNKENPDLDPYVIWVICVNHLLNEHGIYGDEKVAKQLREQRNHELKYDIKVI |
| Ga0247722_100057034 | F033698 | N/A | MKFFRYKQVARLTFMGIDDEYNNVASSYYNTKLKLFNNTEINTKLLRFRINNLHNIKLSQNAKLILESVYLPCVFDNNLDVKHDTNIVLRLKNISGSNCFNSSNDNDSSPIIFSHSVQSRPEPIVRTLTTTLAGAISTYTNQSTNINYYDTGISFFNPSPDKLYNFTIPNTFTNNTVFEFEITYEMNAGDNIVLADDNELFYKFQCSLIICDVDEEELISNDSNTVDYNKFKPHFPLKNLINNNG |
| Ga0247722_100057035 | F009252 | N/A | MDKINIYINSKNRDLNESISNFTVRIPQNLLRLEQGEHFSLNVNGFYCYNSWFNCIDGFNNEFHIIIKNIDNEVIETYIYKLNDGNPNVNDVKSNLNNLLLNKVNITYDKQRNKFIFKRTLPVSTQQYKMYLKIINSEDFLGFYKSDRDIEILLPYLQNVFSNNIINILGDEAIIIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLKYNNEDGGDSFHYRLANVEQITWFTLTIHNQDNELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |