NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10005703

Scaffold Ga0247722_10005703


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10005703 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5779
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003888Metagenome / Metatranscriptome463Y
F009252Metagenome320Y
F033698Metagenome / Metatranscriptome176Y
F054611Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0247722_1000570310F003888N/AMILLKMAITYLSYNIYMDVVSEIEVIESDVKDVEQKCKKVNCGAIYDAIIASLKLLYDLIFVCTKKKT
Ga0247722_100057033F054611N/AMADIDEERLQILMELVNKENPDLDPYVIWVICVNHLLNEHGIYGDEKVAKQLREQRNHELKYDIKVI
Ga0247722_100057034F033698N/AMKFFRYKQVARLTFMGIDDEYNNVASSYYNTKLKLFNNTEINTKLLRFRINNLHNIKLSQNAKLILESVYLPCVFDNNLDVKHDTNIVLRLKNISGSNCFNSSNDNDSSPIIFSHSVQSRPEPIVRTLTTTLAGAISTYTNQSTNINYYDTGISFFNPSPDKLYNFTIPNTFTNNTVFEFEITYEMNAGDNIVLADDNELFYKFQCSLIICDVDEEELISNDSNTVDYNKFKPHFPLKNLINNNG
Ga0247722_100057035F009252N/AMDKINIYINSKNRDLNESISNFTVRIPQNLLRLEQGEHFSLNVNGFYCYNSWFNCIDGFNNEFHIIIKNIDNEVIETYIYKLNDGNPNVNDVKSNLNNLLLNKVNITYDKQRNKFIFKRTLPVSTQQYKMYLKIINSEDFLGFYKSDRDIEILLPYLQNVFSNNIINILGDEAIIIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLKYNNEDGGDSFHYRLANVEQITWFTLTIHNQDNELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAM

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