Scaffold Ga0247722_10000309

Overview

Basic Information

• Taxon OID: 3300028027
• Scaffold ID: Ga0247722_10000309
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31410
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.52%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F027518	Metagenome / Metatranscriptome	194	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F041764	Metagenome / Metatranscriptome	159	N
F071242	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247722_1000030918	F027518	N/A	MNTENEITLIHEQLQEMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYINNQRLQVARLGGIATAAGIVGGLIVQLILKMI
Ga0247722_1000030922	F021113	N/A	MDKREYQPDALIVIIATSVFWMLVCLAFWNFNPKIQTEIQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQLTAKTTYRTRRDTILVLDTIYKVDVIRLVNSCDSVIASDSLVIDNLQEQINIKDEKTNNLQEVVGAYEQKTNLLSEEINTLDADKKKLEKQKKRRNRALVFSSSVAILSTFVLAILL
Ga0247722_100003093	F036240	AGAAG	MANEQSAPNFFAVVNDMAKRFVELMQSDYRLKRKVGRNYTNAVSSGTLVKSLAYRLKIKGKSIDISIYAKGKASQYFLARENGRRAGATPPPVSAILDWMRLKPIKLRDKESGKFKKPTEELKRQVAFMIARKIGRDGIKGWKAFDYAYENIWDEYEAKVVAAFGKDFGASLDGLNDI
Ga0247722_100003094	F028175	N/A	MAITIEEQPYEYTPIGQRLMIVCRSTNVTNAGFRFVFDFGSFQVNVQPNAQNKGMLDLAPIFRESLQHDASLLTTSADTENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNTRYALDGITKYLMSERNVDTHKWSEAAARGLSSNFVYIPTRLADWGIMYIPSATALLADSDFDIAVFSTYDDSDTLIDTVNVNLSNANNLVNVIGANPTNLINGGLDFTNVKYYTIQIGKEIAFPVYTPASRVYCFYLVPDDCRFDNVRLGWTNTCGGIDYFNFTKKSELSFNYDRKQYQKVVGSYNTASFAFNTWDRGATDRYVTTTKGLQINSDWISVGEFELLQTLCRSNDVFIIGDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0247722_1000030946	F023350	N/A	VTLEHYIDGNYKRFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKTKIRANVIRKIK
Ga0247722_100003096	F071242	N/A	MEQTSKELLQNKAGAMVACLEFIKLNIKSESKYGRIANGKNKLAKWLCRLHNCTPIYVNVAFWIFIIYIIFF
Ga0247722_100003099	F041764	GAGG	MNIEAGGFLKLELYNDDANLFLLALTKITKEGAAMGFKTYGLNEQEVKVLNDILENLG