NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10000309

Scaffold Ga0247722_10000309


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10000309 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31410
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.52%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021113Metagenome / Metatranscriptome220Y
F023350Metagenome / Metatranscriptome210N
F027518Metagenome / Metatranscriptome194N
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F041764Metagenome / Metatranscriptome159N
F071242Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0247722_1000030918F027518N/AMNTENEITLIHEQLQEMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYINNQRLQVARLGGIATAAGIVGGLIVQLILKMI
Ga0247722_1000030922F021113N/AMDKREYQPDALIVIIATSVFWMLVCLAFWNFNPKIQTEIQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQLTAKTTYRTRRDTILVLDTIYKVDVIRLVNSCDSVIASDSLVIDNLQEQINIKDEKTNNLQEVVGAYEQKTNLLSEEINTLDADKKKLEKQKKRRNRALVFSSSVAILSTFVLAILL
Ga0247722_100003093F036240AGAAGMANEQSAPNFFAVVNDMAKRFVELMQSDYRLKRKVGRNYTNAVSSGTLVKSLAYRLKIKGKSIDISIYAKGKASQYFLARENGRRAGATPPPVSAILDWMRLKPIKLRDKESGKFKKPTEELKRQVAFMIARKIGRDGIKGWKAFDYAYENIWDEYEAKVVAAFGKDFGASLDGLNDI
Ga0247722_100003094F028175N/AMAITIEEQPYEYTPIGQRLMIVCRSTNVTNAGFRFVFDFGSFQVNVQPNAQNKGMLDLAPIFRESLQHDASLLTTSADTENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNTRYALDGITKYLMSERNVDTHKWSEAAARGLSSNFVYIPTRLADWGIMYIPSATALLADSDFDIAVFSTYDDSDTLIDTVNVNLSNANNLVNVIGANPTNLINGGLDFTNVKYYTIQIGKEIAFPVYTPASRVYCFYLVPDDCRFDNVRLGWTNTCGGIDYFNFTKKSELSFNYDRKQYQKVVGSYNTASFAFNTWDRGATDRYVTTTKGLQINSDWISVGEFELLQTLCRSNDVFIIGDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0247722_1000030946F023350N/AVTLEHYIDGNYKRFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKTKIRANVIRKIK
Ga0247722_100003096F071242N/AMEQTSKELLQNKAGAMVACLEFIKLNIKSESKYGRIANGKNKLAKWLCRLHNCTPIYVNVAFWIFIIYIIFF
Ga0247722_100003099F041764GAGGMNIEAGGFLKLELYNDDANLFLLALTKITKEGAAMGFKTYGLNEQEVKVLNDILENLG

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