Basic Information | |
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Taxon OID | 3300028027 Open in IMG/M |
Scaffold ID | Ga0247722_10000309 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31410 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (18.52%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F021113 | Metagenome / Metatranscriptome | 220 | Y |
F023350 | Metagenome / Metatranscriptome | 210 | N |
F027518 | Metagenome / Metatranscriptome | 194 | N |
F028175 | Metagenome / Metatranscriptome | 192 | Y |
F036240 | Metagenome / Metatranscriptome | 170 | N |
F041764 | Metagenome / Metatranscriptome | 159 | N |
F071242 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247722_1000030918 | F027518 | N/A | MNTENEITLIHEQLQEMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYINNQRLQVARLGGIATAAGIVGGLIVQLILKMI |
Ga0247722_1000030922 | F021113 | N/A | MDKREYQPDALIVIIATSVFWMLVCLAFWNFNPKIQTEIQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQLTAKTTYRTRRDTILVLDTIYKVDVIRLVNSCDSVIASDSLVIDNLQEQINIKDEKTNNLQEVVGAYEQKTNLLSEEINTLDADKKKLEKQKKRRNRALVFSSSVAILSTFVLAILL |
Ga0247722_100003093 | F036240 | AGAAG | MANEQSAPNFFAVVNDMAKRFVELMQSDYRLKRKVGRNYTNAVSSGTLVKSLAYRLKIKGKSIDISIYAKGKASQYFLARENGRRAGATPPPVSAILDWMRLKPIKLRDKESGKFKKPTEELKRQVAFMIARKIGRDGIKGWKAFDYAYENIWDEYEAKVVAAFGKDFGASLDGLNDI |
Ga0247722_100003094 | F028175 | N/A | MAITIEEQPYEYTPIGQRLMIVCRSTNVTNAGFRFVFDFGSFQVNVQPNAQNKGMLDLAPIFRESLQHDASLLTTSADTENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNTRYALDGITKYLMSERNVDTHKWSEAAARGLSSNFVYIPTRLADWGIMYIPSATALLADSDFDIAVFSTYDDSDTLIDTVNVNLSNANNLVNVIGANPTNLINGGLDFTNVKYYTIQIGKEIAFPVYTPASRVYCFYLVPDDCRFDNVRLGWTNTCGGIDYFNFTKKSELSFNYDRKQYQKVVGSYNTASFAFNTWDRGATDRYVTTTKGLQINSDWISVGEFELLQTLCRSNDVFIIGDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL |
Ga0247722_1000030946 | F023350 | N/A | VTLEHYIDGNYKRFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKTKIRANVIRKIK |
Ga0247722_100003096 | F071242 | N/A | MEQTSKELLQNKAGAMVACLEFIKLNIKSESKYGRIANGKNKLAKWLCRLHNCTPIYVNVAFWIFIIYIIFF |
Ga0247722_100003099 | F041764 | GAGG | MNIEAGGFLKLELYNDDANLFLLALTKITKEGAAMGFKTYGLNEQEVKVLNDILENLG |
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