Scaffold Ga0247722_10000163

Overview

Basic Information

• Taxon OID: 3300028027
• Scaffold ID: Ga0247722_10000163
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41228
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (21.28%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030429	Metagenome	185	Y
F088911	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247722_1000016317	F088911	N/A	MTLTNRDASQITLKQKQKALFAWKSNNDVLVNAGASALREQPTSQSNYVVIMRRQGGCKCSQDALANPYEFNGLSQCGCGAGNS
Ga0247722_1000016338	F030429	N/A	MGIVWRCQDYKISKQAVHKRLERIAQQRGLTLNIIQKQWHLDSRVSDEQAQSEELRKDGLPYETSLLHNAFSVARMSLQDRHYIRSIVESLGENAHVLNGDRILVLYEADLLSTESVLLIQSLLEMRSESGNISVWMTVRESVPLKLNDWFLDIPIALSAPLYHPWSVIVWDWIQTTRRLKEHKIHHIESLRNTVYTLLQRNIRWFDIHQIFLELILENYRELGPDLTAKLLDCLANSPNTAVGHTLTSYRIPIAWESLFVSLYDILVGTL